3D structure

PDB id
1I95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Experimental method
X-RAY DIFFRACTION
Resolution
4.5 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1I95_029 not in the Motif Atlas
Homologous match to IL_4LFB_030
Geometric discrepancy: 0.1113
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

1I95|1|A|G|656
1I95|1|A|G|657
1I95|1|A|A|658
1I95|1|A|A|659
1I95|1|A|U|660
1I95|1|A|U|661
*
1I95|1|A|A|695
1I95|1|A|G|696
1I95|1|A|G|697
1I95|1|A|A|698
1I95|1|A|A|699
1I95|1|A|C|700

Current chains

Chain A
16S RRNA

Nearby chains

Chain F
30S RIBOSOMAL PROTEIN S6
Chain K
30S RIBOSOMAL PROTEIN S11
Chain R
30S RIBOSOMAL PROTEIN S18

Coloring options:


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