Motif IL_04668.2 Version IL_04668.2 of this group appears in releases 3.84 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 4-10 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4EYA_005 | 4EYA | 0.3933 | 0 | Tandem non-canonical cWW pairs with near WC pairs | g+h | RNA (12-mer) | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | * | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | ncSW | ncWW | ncWw | ncWW | cWW | ||
| 2 | IL_8SSW_003 | 8SSW | 0.1739 | 0 | C+D | RNA (28-MER) | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | * | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | cWW | cWH | ncWWa | ncWW | cWH | cWW | ||
| 3 | IL_6O5F_001 | 6O5F | 0.0000 | 0 | C+D | RNA (23-mer) | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | * | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | cWW | ncWW | ncWWa | cWW | cWH | cWW | ||
| 4 | IL_7R9G_001 | 7R9G | 0.2795 | 0 | B | RNA (18-mer) | U | 4 | C | 5 | G | 6 | G | 7 | G | 8 | A | 9 | * | U | 4||||2_555 | C | 5||||2_555 | G | 6||||2_555 | G | 7||||2_555 | G | 8||||2_555 | A | 9||||2_555 | cWW | ncWW | ncWW | cWW | ||||
| 5 | IL_4LFB_030 | 4LFB | 0.3795 | 0 | A | SSU rRNA | G | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | C | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | ||
| 6 | IL_5J7L_034 | 5J7L | 0.3842 | 0 | AA | SSU rRNA | A | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | U | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | ||
| 7 | IL_6CZR_142 | 6CZR | 0.4615 | 0 | 1a | SSU rRNA | G | 657 | G | 658 | A | 659 | A | 660 | U | 661 | U | 662 | * | A | 696 | G | 697 | G | 698 | A | 699 | A | 700 | C | 701 | cWW | cWW | ncWw | ncWWa | ncWW | |||
| 8 | IL_1D4R_002 | 1D4R | 0.5346 | 0 | Other IL | B+A | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | * | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | cWW | cBW | cWB | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAAG*CGCAAG | 2 |
| GGAAUU*AGGAAC | 2 |
| CCUUGG*CCUUGG | 1 |
| UCGGGA*UCGGGA | 1 |
| AGAAUU*AGGAAU | 1 |
| GGGAGC*GGGAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAU*GGAA | 3 |
| GCAA*GCAA | 2 |
| CUUG*CUUG | 1 |
| CGGG*CGGG | 1 |
| GGAG*GGAG | 1 |
- Annotations
-
- (6)
- Other IL (1)
- Tandem non-canonical cWW pairs with near WC pairs (1)
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.05 | Avg 0.34 | Max 0.75
Coloring options: