IL_1I96_011
3D structure
- PDB id
- 1I96 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.2 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 1I96|1|A|U|239, 1I96|1|A|C|275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1I96_011 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1358
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
1I96|1|A|C|237
1I96|1|A|A|238
1I96|1|A|U|239
1I96|1|A|C|240
1I96|1|A|A|241
1I96|1|A|G|242
*
1I96|1|A|C|272
1I96|1|A|G|273
1I96|1|A|A|274
1I96|1|A|C|275
1I96|1|A|G|276
1I96|1|A|A|277
1I96|1|A|C|278
1I96|1|A|G|279
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
Coloring options: