IL_1I96_053

3D structure

PDB id

1I96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

1I96|1|A|U|1238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I96_053 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2256

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

1I96|1|A|G|1236
1I96|1|A|A|1237
1I96|1|A|U|1238
1I96|1|A|G|1239
*
1I96|1|A|C|1258
1I96|1|A|U|1259
1I96|1|A|A|1260
1I96|1|A|A|1261
1I96|1|A|U|1262
1I96|1|A|C|1263

Current chains

Chain A

16S RRNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14