IL_1I97_009

3D structure

PDB id

1I97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

1I97|1|A|G|123, 1I97|1|A|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I97_009 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.2149

The information below is about IL_6CZR_119

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

1I97|1|A|U|122
1I97|1|A|G|123
1I97|1|A|A|124
1I97|1|A|C|125
*
1I97|1|A|G|226
1I97|1|A|G|227

Current chains

Chain A

16S RRNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20