3D structure

PDB id
1I97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Experimental method
X-RAY DIFFRACTION
Resolution
4.5 Å

Loop

Sequence
GGACG*CGGUAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1I97_025 not in the Motif Atlas
Geometric match to IL_6CZR_130
Geometric discrepancy: 0.2076
The information below is about IL_6CZR_130
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.3
Basepair signature
cWW-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

1I97|1|A|G|440
1I97|1|A|G|441
1I97|1|A|A|442
1I97|1|A|C|443
1I97|1|A|G|444
*
1I97|1|A|C|467
1I97|1|A|G|468
1I97|1|A|G|469
1I97|1|A|U|470
1I97|1|A|A|471
1I97|1|A|C|472

Current chains

Chain A
16S RRNA

Nearby chains

Chain P
30S RIBOSOMAL PROTEIN S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0536 s
Application loaded.