#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 111-112-103-44-95-86-7
1 IL_5J7L_0225J7L0.65950tSH-tHW-tWWAA SSU rRNAC483G484U485U486A487C488*G446G447A448G449G450cWWtWWtWHtHScWW
2 IL_4LFB_0184LFB0.000006x5 Sarcin-Ricin; G-bulgeA SSU rRNAC483G484G485U486A487C488*G446G447A448C449G450cWWcSHtWHtHScWW
3 IL_6CZR_1306CZR0.161906x5 Sarcin-Ricin; G-bulge1a SSU rRNAC468G469G470U471A472C473*G441G442A443C444G445cWWncSHtWHtHScWW
4 IL_5J7L_3095J7L0.476216x5 Sarcin-Ricin; G-bulgeDA LSU rRNAU1712A1713G1715U1716A1717G1718*U1742G1743A1744A1745A1746cWWtWWcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGUAC*GGACG2
CGUUAC*GGAGG1
UAUGUAG*UGAAA1
Non-Watson-Crick part of the motif
SequenceCounts
GGUA*GAC2
GUUA*GAG1
AUGUA*GAA1

Release history

Release3.773.783.793.803.813.823.833.843.853.863.873.88
Date2023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-11
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 6x5 Sarcin-Ricin; G-bulge (3)
  • tSH-tHW-tWW (1)
  • Basepair signature
    cWW-L-R-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.16 | Avg 0.40 | Max 0.71
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 1.4341 s