Motif IL_88269.3 Version IL_88269.3 of this group appears in releases 3.77 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-4 | 4-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_309 | 5J7L | 0.4762 | 1 | 6x5 Sarcin-Ricin; G-bulge | DA | LSU rRNA | U | 1712 | A | 1713 | G | 1715 | U | 1716 | A | 1717 | G | 1718 | * | U | 1742 | G | 1743 | A | 1744 | A | 1745 | A | 1746 | cWW | tWW | cSH | tWH | tHS | cWW |
| 2 | IL_6CZR_130 | 6CZR | 0.1619 | 0 | 6x5 Sarcin-Ricin; G-bulge | 1a | SSU rRNA | C | 468 | G | 469 | G | 470 | U | 471 | A | 472 | C | 473 | * | G | 441 | G | 442 | A | 443 | C | 444 | G | 445 | cWW | ncSH | tWH | tHS | cWW | |
| 3 | IL_4LFB_018 | 4LFB | 0.0000 | 0 | 6x5 Sarcin-Ricin; G-bulge | A | SSU rRNA | C | 483 | G | 484 | G | 485 | U | 486 | A | 487 | C | 488 | * | G | 446 | G | 447 | A | 448 | C | 449 | G | 450 | cWW | cSH | tWH | tHS | cWW | |
| 4 | IL_5J7L_022 | 5J7L | 0.6595 | 0 | tSH-tHW-tWW | AA | SSU rRNA | C | 483 | G | 484 | U | 485 | U | 486 | A | 487 | C | 488 | * | G | 446 | G | 447 | A | 448 | G | 449 | G | 450 | cWW | tWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGUAC*GGACG | 2 |
| UAUGUAG*UGAAA | 1 |
| CGUUAC*GGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUA*GAC | 2 |
| AUGUA*GAA | 1 |
| GUUA*GAG | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 6x5 Sarcin-Ricin; G-bulge (3)
- tSH-tHW-tWW (1)
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.16 | Avg 0.40 | Max 0.71
Coloring options: