IL_1I97_069

3D structure

PDB id

1I97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I97_069 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1721

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

1I97|1|A|G|1290
1I97|1|A|G|1291
1I97|1|A|G|1292
*
1I97|1|A|C|1307
1I97|1|A|C|1308
1I97|1|A|C|1309

Current chains

Chain A

16S RRNA

Nearby chains

Chain M

30S RIBOSOMAL PROTEIN S13

Chain S

30S RIBOSOMAL PROTEIN S19

Chain U

30S RIBOSOMAL PROTEIN THX