3D structure

PDB id
1I97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Experimental method
X-RAY DIFFRACTION
Resolution
4.5 Å

Loop

Sequence
CCGUC*GUCUGG
Length
11 nucleotides
Bulged bases
1I97|1|A|U|1177
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1I97_106 not in the Motif Atlas
Geometric match to IL_7VYX_004
Geometric discrepancy: 0.3802
The information below is about IL_7VYX_004
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

1I97|1|A|C|1041
1I97|1|A|C|1042
1I97|1|A|G|1043
1I97|1|A|U|1044
1I97|1|A|C|1045
*
1I97|1|A|G|1174
1I97|1|A|U|1175
1I97|1|A|C|1176
1I97|1|A|U|1177
1I97|1|A|G|1178
1I97|1|A|G|1179

Current chains

Chain A
16S RRNA

Nearby chains

Chain C
30S RIBOSOMAL PROTEIN S3
Chain E
30S RIBOSOMAL PROTEIN S5
Chain J
30S RIBOSOMAL PROTEIN S10
Chain N
30S RIBOSOMAL PROTEIN S14

Coloring options:


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