IL_1I97_106

3D structure

PDB id

1I97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

CCGUC*GUCUGG

Length

11 nucleotides

Bulged bases

1I97|1|A|U|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I97_106 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3802

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

1I97|1|A|C|1041
1I97|1|A|C|1042
1I97|1|A|G|1043
1I97|1|A|U|1044
1I97|1|A|C|1045
*
1I97|1|A|G|1174
1I97|1|A|U|1175
1I97|1|A|C|1176
1I97|1|A|U|1177
1I97|1|A|G|1178
1I97|1|A|G|1179

Current chains

Chain A

16S RRNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain E

30S RIBOSOMAL PROTEIN S5

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14