IL_1I9F_006

3D structure

PDB id

1I9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGGC*GGUAC

Length

9 nucleotides

Bulged bases

1I9F|3|A|U|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I9F_006 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.2397

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

1I9F|3|A|G|6
1I9F|3|A|G|7
1I9F|3|A|G|8
1I9F|3|A|C|9
*
1I9F|3|A|G|25
1I9F|3|A|G|26
1I9F|3|A|U|27
1I9F|3|A|A|28
1I9F|3|A|C|29

Current chains

Chain A

REV RESPONSE ELEMENT RNA

Nearby chains

Chain B

RSG-1.2 PEPTIDE