IL_1IBK_034

3D structure

PDB id

1IBK (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1IBK_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0647

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

1IBK|1|A|G|887
1IBK|1|A|G|888
1IBK|1|A|A|889
1IBK|1|A|G|890
1IBK|1|A|U|891
1IBK|1|A|A|892
1IBK|1|A|C|893
1IBK|1|A|G|894
*
1IBK|1|A|U|905
1IBK|1|A|G|906
1IBK|1|A|A|907
1IBK|1|A|A|908
1IBK|1|A|A|909
1IBK|1|A|C|910

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12