IL_1IBK_055

3D structure

PDB id

1IBK (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

1IBK|1|A|C|1400, 1IBK|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1IBK_055 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2102

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

1IBK|1|A|C|1399
1IBK|1|A|C|1400
1IBK|1|A|G|1401
*
1IBK|1|A|C|1501
1IBK|1|A|A|1502
1IBK|1|A|A|1503
1IBK|1|A|G|1504

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain X

P-SITE MESSENGER RNA FRAGMENT