Motif IL_61438.1 Version IL_61438.1 of this group appears in releases 3.88 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_6CZR_165 | 6CZR | 0.1997 | 2 | 1a | SSU rRNA | C | 1479 | A | 1480 | G | 1482 | * | C | 1382 | G | 1384 | cWW | ncWW |
2 | IL_8C3A_470 | 8C3A | 0.1049 | 2 | CM | SSU rRNA | C | 1751 | A | 1752 | G | 1754 | * | C | 1623 | G | 1625 | cWW | cWW |
3 | IL_5J7L_058 | 5J7L | 0.0593 | 2 | AA | SSU rRNA | C | 1501 | A | 1502 | G | 1504 | * | C | 1399 | G | 1401 | cWW | cWW |
4 | IL_4V88_463 | 4V88 | 0.0000 | 2 | A6 | SSU rRNA | C | 1764 | A | 1765 | G | 1767 | * | C | 1636 | G | 1638 | cWW | cWW |
5 | IL_4LFB_056 | 4LFB | 0.1841 | 2 | A | SSU rRNA | C | 1501 | A | 1502 | G | 1504 | * | C | 1399 | G | 1401 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAG*CCG | 3 |
CAAG*C(5MC)G | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA*C | 3 |
AA*(5MC) | 2 |
- Annotations
-
- (5)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.14 | Max 0.30
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