3D structure

PDB id
1IBL (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.11 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1IBL_023 not in the Motif Atlas
Homologous match to IL_4LFB_023
Geometric discrepancy: 0.092
The information below is about IL_4LFB_023
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

1IBL|1|A|U|580
1IBL|1|A|G|581
1IBL|1|A|U|582
1IBL|1|A|A|583
1IBL|1|A|G|584
*
1IBL|1|A|U|757
1IBL|1|A|G|758
1IBL|1|A|A|759
1IBL|1|A|G|760
1IBL|1|A|G|761

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain L
30S RIBOSOMAL PROTEIN S12
Chain O
30S RIBOSOMAL PROTEIN S15
Chain Q
30S RIBOSOMAL PROTEIN S17

Coloring options:


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