3D structure

PDB id
1IBL (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.11 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1IBL_026 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.1199
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

1IBL|1|A|U|605
1IBL|1|A|G|606
1IBL|1|A|A|607
1IBL|1|A|A|608
1IBL|1|A|A|609
1IBL|1|A|G|610
1IBL|1|A|A|611
1IBL|1|A|C|612
*
1IBL|1|A|G|628
1IBL|1|A|G|629
1IBL|1|A|G|630
1IBL|1|A|G|631
1IBL|1|A|A|632
1IBL|1|A|G|633

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain D
30S RIBOSOMAL PROTEIN S4
Chain H
30S RIBOSOMAL PROTEIN S8
Chain P
30S RIBOSOMAL PROTEIN S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2432 s