IL_1IBL_042

3D structure

PDB id

1IBL (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

1IBL|1|A|C|1200, 1IBL|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1IBL_042 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.0771

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

1IBL|1|A|G|1057
1IBL|1|A|G|1058
*
1IBL|1|A|U|1199
1IBL|1|A|C|1200
1IBL|1|A|A|1201
1IBL|1|A|G|1202
1IBL|1|A|C|1203

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14