IL_1IBM_029
3D structure
- PDB id
- 1IBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 1IBM|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1IBM_029 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.077
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
1IBM|1|A|G|662
1IBM|1|A|A|663
1IBM|1|A|G|664
1IBM|1|A|A|665
1IBM|1|A|G|666
*
1IBM|1|A|U|740
1IBM|1|A|G|741
1IBM|1|A|G|742
1IBM|1|A|U|743
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain F
- 30S RIBOSOMAL PROTEIN S6
- Chain O
- 30S RIBOSOMAL PROTEIN S15
- Chain R
- 30S RIBOSOMAL PROTEIN S18
Coloring options: