IL_1IBM_031
3D structure
- PDB id
- 1IBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 1IBM|1|A|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1IBM_031 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.0823
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
1IBM|1|A|G|683
1IBM|1|A|A|684
1IBM|1|A|G|685
1IBM|1|A|U|686
1IBM|1|A|A|687
1IBM|1|A|G|688
*
1IBM|1|A|C|699
1IBM|1|A|G|700
1IBM|1|A|C|701
1IBM|1|A|A|702
1IBM|1|A|G|703
1IBM|1|A|A|704
1IBM|1|A|U|705
1IBM|1|A|A|706
1IBM|1|A|C|707
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain K
- 30S RIBOSOMAL PROTEIN S11
- Chain R
- 30S RIBOSOMAL PROTEIN S18
Coloring options: