IL_1IE2_001

3D structure

PDB id

1IE2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of an In Vitro Selected RNA which is Sequence Specifically Recognized by RBD12 of Hamster Nucleolin.sNRE (anti)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAAAU*GAAGUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1IE2_001 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.3583

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1IE2|2|A|C|4
1IE2|2|A|G|5
1IE2|2|A|A|6
1IE2|2|A|A|7
1IE2|2|A|A|8
1IE2|2|A|U|9
*
1IE2|2|A|G|13
1IE2|2|A|A|14
1IE2|2|A|A|15
1IE2|2|A|G|16
1IE2|2|A|U|17
1IE2|2|A|A|18
1IE2|2|A|G|19

Current chains

Chain A

5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*UP*CP*CP*CP*GP*AP*AP*GP*UP*AP*GP*GP*CP*C)-3'

Nearby chains