IL_1J5A_001
3D structure
- PDB id
- 1J5A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1J5A_001 not in the Motif Atlas
- Geometric match to IL_7RQB_001
- Geometric discrepancy: 0.1688
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
1J5A|1|A|G|24
1J5A|1|A|U|25
1J5A|1|A|G|26
1J5A|1|A|G|27
1J5A|1|A|A|28
1J5A|1|A|U|29
1J5A|1|A|G|30
*
1J5A|1|A|C|520
1J5A|1|A|U|521
1J5A|1|A|G|522
1J5A|1|A|A|523
1J5A|1|A|A|524
1J5A|1|A|A|525
1J5A|1|A|C|526
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain L
- RIBOSOMAL PROTEIN L22
- Chain M
- RIBOSOMAL PROTEIN L32
Coloring options: