IL_1J5A_007

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_007 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1258

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1J5A|1|A|G|165
1J5A|1|A|G|166
1J5A|1|A|A|167
1J5A|1|A|A|168
1J5A|1|A|C|169
1J5A|1|A|U|170
1J5A|1|A|G|171
*
1J5A|1|A|C|178
1J5A|1|A|U|179
1J5A|1|A|C|180
1J5A|1|A|A|181
1J5A|1|A|G|182
1J5A|1|A|U|183
1J5A|1|A|A|184
1J5A|1|A|C|185

Current chains

Chain A

23S RRNA

Nearby chains