IL_1J5A_019

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

1J5A|1|A|G|742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_019 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.2047

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

1J5A|1|A|U|715
1J5A|1|A|U|716
*
1J5A|1|A|G|741
1J5A|1|A|G|742
1J5A|1|A|A|743

Current chains

Chain A

23S RRNA

Nearby chains