IL_1J5A_047

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_047 not in the Motif Atlas

Homologous match to IL_7A0S_042

Geometric discrepancy: 0.2572

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1J5A|1|A|C|1218
1J5A|1|A|C|1219
1J5A|1|A|G|1220
*
1J5A|1|A|C|1252
1J5A|1|A|C|1253
1J5A|1|A|G|1254

Current chains

Chain A

23S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN L4