IL_1J5A_062

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_062 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.2913

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

1J5A|1|A|G|1668
1J5A|1|A|A|1669
1J5A|1|A|G|1670
1J5A|1|A|A|1671
1J5A|1|A|A|1672
1J5A|1|A|C|1673
*
1J5A|1|A|G|1987
1J5A|1|A|A|1988
1J5A|1|A|C|1989

Current chains

Chain A

23S RRNA

Nearby chains