IL_1J5A_074

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAGG*CCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_074 not in the Motif Atlas

Geometric match to IL_8C3A_508

Geometric discrepancy: 0.3993

The information below is about IL_8C3A_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07195.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

1J5A|1|A|G|1838
1J5A|1|A|A|1839
1J5A|1|A|A|1840
1J5A|1|A|G|1841
1J5A|1|A|G|1842
*
1J5A|1|A|C|1875
1J5A|1|A|C|1876
1J5A|1|A|C|1877

Current chains

Chain A

23S RRNA

Nearby chains