IL_1J5A_078

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

1J5A|1|A|U|2051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_078 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.1867

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

1J5A|1|A|G|2050
1J5A|1|A|U|2051
1J5A|1|A|G|2052
*
1J5A|1|A|C|2421
1J5A|1|A|C|2422

Current chains

Chain A

23S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN L4