IL_1J5A_084

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

1J5A|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_084 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2455

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1J5A|1|A|C|2276
1J5A|1|A|A|2277
1J5A|1|A|A|2278
*
1J5A|1|A|U|2296
1J5A|1|A|G|2297
1J5A|1|A|U|2298
1J5A|1|A|A|2299
1J5A|1|A|G|2300

Current chains

Chain A

23S RRNA

Nearby chains