IL_1J5A_105

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CU*ACAUG

Length

7 nucleotides

Bulged bases

1J5A|1|A|C|2691, 1J5A|1|A|A|2692, 1J5A|1|A|U|2693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_105 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.1094

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

1J5A|1|A|C|2674
1J5A|1|A|U|2675
*
1J5A|1|A|A|2690
1J5A|1|A|C|2691
1J5A|1|A|A|2692
1J5A|1|A|U|2693
1J5A|1|A|G|2694

Current chains

Chain A

23S RRNA

Nearby chains