IL_1J5A_112

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

1J5A|1|A|U|1037, 1J5A|1|A|A|1138, 1J5A|1|A|U|1141, 1J5A|1|A|U|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_112 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.2166

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

1J5A|1|A|G|1035
1J5A|1|A|G|1036
1J5A|1|A|U|1037
1J5A|1|A|U|1038
1J5A|1|A|A|1039
1J5A|1|A|A|1040
1J5A|1|A|G|1041
*
1J5A|1|A|C|1135
1J5A|1|A|G|1136
1J5A|1|A|A|1137
1J5A|1|A|A|1138
1J5A|1|A|A|1139
1J5A|1|A|A|1140
1J5A|1|A|U|1141
1J5A|1|A|G|1142
1J5A|1|A|A|1143
1J5A|1|A|U|1144
1J5A|1|A|C|1145
1J5A|1|A|G|1146
1J5A|1|A|G|1147
1J5A|1|A|G|1148
1J5A|1|A|G|1149
1J5A|1|A|C|1150

Current chains

Chain A

23S RRNA

Nearby chains