IL_1J5E_047

3D structure

PDB id

1J5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5E_047 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.2968

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

1J5E|1|A|C|1128
1J5E|1|A|C|1129
1J5E|1|A|A|1130
1J5E|1|A|G|1131
1J5E|1|A|C|1132
*
1J5E|1|A|G|1142
1J5E|1|A|G|1143

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9