IL_1J7T_003
3D structure
- PDB id
- 1J7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAG*CAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1J7T_003 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.0946
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
1J7T|1|A|G|15
1J7T|1|A|A|16
1J7T|1|A|A|17
1J7T|1|A|G|18
*
1J7T|1|B|C|28
1J7T|1|B|A|29
1J7T|1|B|C|30
Current chains
- Chain A
- 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'
- Chain B
- 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'
Nearby chains
No other chains within 10ÅColoring options: