IL_1J9H_005

3D structure

PDB id

1J9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an RNA Duplex with Uridine Bulges

Experimental method

X-RAY DIFFRACTION

Resolution

1.4 Å

Loop

Sequence

GUC*G(CBR)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: CBR

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

1J9H|1|A|G|3
1J9H|1|A|U|4
1J9H|1|A|C|5
*
1J9H|1|B|G|15
1J9H|1|B|CBR|16

Current chains

Chain A

5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3'

Chain B

5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3'

Nearby chains

Chain C

5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3'

Chain D

5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3'