IL_1JBS_002

3D structure

PDB id

1JBS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

1.97 Å

Loop

Sequence

(OMC)UCAGUAC*GGAACC(OMG)

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JBS_002 not in the Motif Atlas

Geometric match to IL_1JBR_001

Geometric discrepancy: 0.1131

The information below is about IL_1JBR_001

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1JBS|1|D|OMC|6
1JBS|1|D|U|7
1JBS|1|D|C|8
1JBS|1|D|A|9
1JBS|1|D|G|10
1JBS|1|D|U|11
1JBS|1|D|A|12
1JBS|1|D|C|13
*
1JBS|1|D|G|18
1JBS|1|D|G|19
1JBS|1|D|A|20
1JBS|1|D|A|21
1JBS|1|D|C|22
1JBS|1|D|C|23
1JBS|1|D|OMG|24

Current chains

Chain D

29-mer sarcin/ricin domain RNA analog

Nearby chains

Chain B

restrictocin