IL_1JBT_001
3D structure
- PDB id
- 1JBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JBT_001 not in the Motif Atlas
- Geometric match to IL_1JBR_001
- Geometric discrepancy: 0.1145
- The information below is about IL_1JBR_001
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
1JBT|1|C|C|6
1JBT|1|C|U|7
1JBT|1|C|C|8
1JBT|1|C|A|9
1JBT|1|C|G|10
1JBT|1|C|U|11
1JBT|1|C|A|12
1JBT|1|C|C|13
*
1JBT|1|C|G|18
1JBT|1|C|G|19
1JBT|1|C|A|20
1JBT|1|C|A|21
1JBT|1|C|C|22
1JBT|1|C|C|23
1JBT|1|C|G|24
Current chains
- Chain C
- 29-MER SARCIN/RICIN DOMAIN RNA ANALOG
Nearby chains
- Chain A
- RESTRICTOCIN
Coloring options: