IL_1JJ2_013

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.04

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1JJ2|1|0|C|290
1JJ2|1|0|C|291
1JJ2|1|0|G|292
1JJ2|1|0|A|293
1JJ2|1|0|C|294
1JJ2|1|0|C|295
1JJ2|1|0|G|296
*
1JJ2|1|0|C|355
1JJ2|1|0|C|356
1JJ2|1|0|A|357
1JJ2|1|0|G|358
1JJ2|1|0|U|359
1JJ2|1|0|A|360
1JJ2|1|0|C|361
1JJ2|1|0|G|362

Current chains

Chain 0

23S RRNA

Nearby chains