IL_1JJ2_020

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_020 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0462

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1JJ2|1|0|U|567
1JJ2|1|0|G|568
1JJ2|1|0|A|569
1JJ2|1|0|C|570
1JJ2|1|0|C|571
1JJ2|1|0|G|572
*
1JJ2|1|0|C|585
1JJ2|1|0|C|586
1JJ2|1|0|A|587
1JJ2|1|0|G|588
1JJ2|1|0|U|589
1JJ2|1|0|A|590
1JJ2|1|0|A|591

Current chains

Chain 0

23S RRNA

Nearby chains

Chain V

RIBOSOMAL PROTEIN L30