IL_1JJ2_032
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCGAG*CGUUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 1JJ2|1|0|U|1029, 1JJ2|1|0|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_032 not in the Motif Atlas
- Homologous match to IL_4V9F_031
- Geometric discrepancy: 0.0211
- The information below is about IL_4V9F_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
1JJ2|1|0|C|936
1JJ2|1|0|C|937
1JJ2|1|0|G|938
1JJ2|1|0|A|939
1JJ2|1|0|G|940
*
1JJ2|1|0|C|1026
1JJ2|1|0|G|1027
1JJ2|1|0|U|1028
1JJ2|1|0|U|1029
1JJ2|1|0|U|1030
1JJ2|1|0|G|1031
1JJ2|1|0|A|1032
1JJ2|1|0|C|1033
1JJ2|1|0|G|1034
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain N
- RIBOSOMAL PROTEIN L18E
- Chain P
- RIBOSOMAL PROTEIN L21E
- Chain V
- RIBOSOMAL PROTEIN L30
Coloring options: