Motif IL_94910.1 Version IL_94910.1 of this group appears in releases 3.89 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-11 | 6-9 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_031 | 4V9F | 0.3382 | 2 | Kink-turn | 0 | LSU rRNA | U | 1026 | G | 1027 | U | 1028 | G | 1031 | A | 1032 | C | 1033 | G | 1034 | * | C | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | ntsS | tSH | cBW | cWW |
| 2 | IL_7A0S_004 | 7A0S | 0.0000 | 1 | Kink-turn | X | LSU rRNA | C | 96 | U | 97 | U | 98 | G | 100 | A | 101 | C | 102 | U | 103 | * | A | 80 | C | 81 | G | 82 | A | 83 | G | 84 | cWW | ntSH | cBW | cWW | |
| 3 | IL_4AOB_002 | 4AOB | 0.2400 | 1 | Kink-turn | A | SAM-I riboswitch | U | 31 | G | 32 | A | 33 | G | 35 | A | 36 | C | 37 | C | 38 | * | G | 17 | C | 18 | A | 19 | A | 20 | G | 21 | cWW | tsS | tSH | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUUUGACG*CCGAG | 1 |
| CUUUGACU*ACGAG | 1 |
| UGAUGACC*GCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUUGAC*CGA | 1 |
| UUUGAC*CGA | 1 |
| GAUGAC*CAA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (3)
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Heat map statistics
- Min 0.24 | Avg 0.22 | Max 0.40
Coloring options: