IL_1JJ2_041

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

1JJ2|1|0|C|1245, 1JJ2|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_041 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1464

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1JJ2|1|0|U|1115
1JJ2|1|0|U|1116
1JJ2|1|0|A|1117
1JJ2|1|0|A|1118
1JJ2|1|0|G|1119
1JJ2|1|0|U|1120
1JJ2|1|0|G|1121
*
1JJ2|1|0|C|1243
1JJ2|1|0|U|1244
1JJ2|1|0|C|1245
1JJ2|1|0|A|1246
1JJ2|1|0|A|1247
1JJ2|1|0|A|1248

Current chains

Chain 0

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6

Chain I

RIBOSOMAL PROTEIN L13