IL_1JJ2_057

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

1JJ2|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_057 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0311

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1JJ2|1|0|C|1578
1JJ2|1|0|C|1579
1JJ2|1|0|A|1580
1JJ2|1|0|A|1581
1JJ2|1|0|C|1582
1JJ2|1|0|U|1583
*
1JJ2|1|0|A|1612
1JJ2|1|0|C|1613
1JJ2|1|0|G|1614
1JJ2|1|0|A|1615
1JJ2|1|0|A|1616
1JJ2|1|0|C|1617
1JJ2|1|0|G|1618

Current chains

Chain 0

23S RRNA

Nearby chains