Motif IL_34822.1 Version IL_34822.1 of this group appears in releases 3.77 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-9 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_057 | 4V9F | 0.0000 | 1 | 0 | LSU rRNA | C | 1578 | C | 1579 | A | 1580 | A | 1581 | C | 1582 | U | 1583 | * | A | 1612 | C | 1613 | G | 1614 | A | 1615 | A | 1616 | G | 1618 | cWW | tWH | tHS | ncBW | cWW | |
| 2 | IL_3PDR_005 | 3PDR | 0.6424 | 0 | X | M-box riboswitch (ykoK leader) | A | 60 | A | 61 | A | 62 | A | 63 | A | 64 | U | 65 | * | G | 76 | C | 77 | C | 78 | A | 79 | A | 80 | U | 81 | cWW | ntHS | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAACU*ACGAACG | 1 |
| AAAAAU*GCCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAC*CGAAC | 1 |
| AAAA*CCAA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.64 | Avg 0.32 | Max 0.64
Coloring options: