#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-94-95-86-7
1 IL_3PDR_0053PDR0.00000XM-box riboswitch (ykoK leader)A60A61A62A63A64U65*G76C77C78A79A80U81cWWntHSncWWncWW
2 IL_4V9F_0574V9F0.642410 LSU rRNAC1578C1579A1580A1581C1582U1583*A1612C1613G1614A1615A1616G1618cWWtWHtHSncBWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AAAAAU*GCCAAU1
CCAACU*ACGAACG1
Non-Watson-Crick part of the motif
SequenceCounts
AAAA*CCAA1
CAAC*CGAAC1

Release history

Release3.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.994.04.14.24.34.44.54.64.74.84.94.104.114.124.134.144.15
Date2023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-212025-06-182025-07-162025-08-132025-09-102025-10-082025-11-052025-12-032025-12-312026-01-282026-02-252026-03-252026-04-222026-05-202026-06-172026-07-152026-08-122026-09-092026-10-07
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-L-R-L-R-L-R-L-R-cWW
    Heat map statistics
    Min 0.64 | Avg 0.32 | Max 0.64
    Help

    Coloring options:

    Copyright 2026 BGSU RNA group. Database contents are licensed under Creative Commons Attribution 4.0 International (CC BY 4.0). Page generated in 0.6107 s