IL_1JJ2_058
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UGGAAG*CAGGAAG
- Length
- 13 nucleotides
- Bulged bases
- 1JJ2|1|0|G|1604
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_058 not in the Motif Atlas
- Homologous match to IL_4V9F_058
- Geometric discrepancy: 0.0482
- The information below is about IL_4V9F_058
- Detailed Annotation
- Kink-turn
- Broad Annotation
- Kink-turn
- Motif group
- IL_32016.1
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
1JJ2|1|0|U|1587
1JJ2|1|0|G|1588
1JJ2|1|0|G|1589
1JJ2|1|0|A|1590
1JJ2|1|0|A|1591
1JJ2|1|0|G|1592
*
1JJ2|1|0|C|1602
1JJ2|1|0|A|1603
1JJ2|1|0|G|1604
1JJ2|1|0|G|1605
1JJ2|1|0|A|1606
1JJ2|1|0|A|1607
1JJ2|1|0|G|1608
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain O
- RIBOSOMAL PROTEIN L19E
- Chain Y
- RIBOSOMAL PROTEIN L37Ae
Coloring options: