IL_1JJ2_059
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GAGCAAC*GGC
- Length
- 10 nucleotides
- Bulged bases
- 1JJ2|1|0|G|1730
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_059 not in the Motif Atlas
- Homologous match to IL_4V9F_059
- Geometric discrepancy: 0.0256
- The information below is about IL_4V9F_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.5
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
1JJ2|1|0|G|1728
1JJ2|1|0|A|1729
1JJ2|1|0|G|1730
1JJ2|1|0|C|1731
1JJ2|1|0|A|1732
1JJ2|1|0|A|1733
1JJ2|1|0|C|1734
*
1JJ2|1|0|G|2045
1JJ2|1|0|G|2046
1JJ2|1|0|C|2047
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN L3
- Chain Q
- RIBOSOMAL PROTEIN L22
- Chain W
- RIBOSOMAL PROTEIN L31E
Coloring options: