IL_1JJ2_063
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CGUACC*GAAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 1JJ2|1|0|G|1777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_063 not in the Motif Atlas
- Homologous match to IL_4V9F_063
- Geometric discrepancy: 0.0286
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
1JJ2|1|0|C|1764
1JJ2|1|0|G|1765
1JJ2|1|0|U|1766
1JJ2|1|0|A|1767
1JJ2|1|0|C|1768
1JJ2|1|0|C|1769
*
1JJ2|1|0|G|1774
1JJ2|1|0|A|1775
1JJ2|1|0|A|1776
1JJ2|1|0|G|1777
1JJ2|1|0|A|1778
1JJ2|1|0|A|1779
1JJ2|1|0|G|1780
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain O
- RIBOSOMAL PROTEIN L19E
- Chain Y
- RIBOSOMAL PROTEIN L37Ae
Coloring options: