Motif IL_20700.1 Version IL_20700.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8B0X_127 | 8B0X | 0.1155 | 1 | a | LSU rRNA | C | 1688 | G | 1689 | U | 1690 | A | 1691 | A | 1692 | C | 1693 | * | G | 1698 | G | 1699 | A | 1700 | A | 1702 | A | 1703 | G | 1704 | cWW | tSH | tHH | tHS | cWW | |
| 2 | IL_9DFE_068 | 9DFE | 0.1047 | 1 | 1A | LSU rRNA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 3 | IL_4V9F_063 | 4V9F | 0.0522 | 1 | tSH-tSH-tHH-tHS | 0 | LSU rRNA | C | 1764 | G | 1765 | U | 1766 | A | 1767 | C | 1768 | C | 1769 | * | G | 1774 | A | 1775 | A | 1776 | A | 1778 | A | 1779 | G | 1780 | cWW | tSH | tHH | tHS | cWW |
| 4 | IL_9AXU_075 | 9AXU | 0.0000 | 1 | 2 | LSU rRNA | C | 1973 | G | 1974 | U | 1975 | A | 1976 | A | 1977 | C | 1978 | * | G | 1983 | G | 1984 | A | 1985 | A | 1987 | A | 1988 | G | 1989 | cWW | tSH | tHH | tHS | cWW | |
| 5 | IL_8GLP_108 | 8GLP | 0.0482 | 1 | L5 | LSU rRNA | C | 2867 | G | 2868 | U | 2869 | A | 2870 | A | 2871 | C | 2872 | * | G | 2877 | G | 2878 | A | 2879 | A | 2881 | A | 2882 | G | 2883 | cWW | tSH | tHH | tHS | cWW | |
| 6 | IL_8OI5_081 | 8OI5 | 0.0559 | 1 | 1 | LSU rRNA | C | 1914 | G | 1915 | U | 1916 | A | 1917 | A | 1918 | C | 1919 | * | G | 1924 | G | 1925 | A | 1926 | A | 1928 | A | 1929 | G | 1930 | cWW | tSH | tHH | tHS | cWW | |
| 7 | IL_9E6Q_066 | 9E6Q | 0.0743 | 1 | tSH-tSH-tHH-tHS (H) | 1 | LSU rRNA | C | 1830 | G | 1831 | U | 1832 | A | 1833 | A | 1834 | C | 1835 | * | G | 1840 | G | 1841 | A | 1842 | A | 1844 | A | 1845 | G | 1846 | cWW | tSH | tHH | tHS | cWW |
| 8 | IL_8P9A_307 | 8P9A | 0.0666 | 1 | tSH-tSH-tHH-tHS (H) | AR | LSU rRNA | C | 1918 | G | 1919 | U | 1920 | A | 1921 | A | 1922 | C | 1923 | * | G | 1928 | G | 1929 | A | 1930 | A | 1932 | A | 1933 | G | 1934 | cWW | tSH | tHH | tHS | cWW |
| 9 | IL_7A0S_063 | 7A0S | 0.1209 | 1 | tSH-tSH-tHH-tHS | X | LSU rRNA | C | 1703 | G | 1704 | U | 1705 | A | 1706 | A | 1707 | C | 1708 | * | G | 1713 | A | 1714 | A | 1715 | A | 1717 | A | 1718 | G | 1719 | cWW | tSH | tHH | tHS | cWW |
| 10 | IL_4WF9_066 | 4WF9 | 0.1493 | 1 | tSH-tSH-tHH-tHS | X | LSU rRNA | C | 1730 | G | 1731 | U | 1732 | A | 1733 | A | 1734 | C | 1735 | * | G | 1740 | G | 1741 | A | 1742 | A | 1744 | A | 1745 | G | 1746 | cWW | ntSH | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAC*GGAGAAG | 4 |
| CGUAAC*GGAUAAG | 4 |
| CGUACC*GAAGAAG | 1 |
| CGUAAC*GAAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*GAGAA | 4 |
| GUAA*GAUAA | 4 |
| GUAC*AAGAA | 1 |
| GUAA*AAGAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- tSH-tSH-tHH-tHS (3)
- tSH-tSH-tHH-tHS (H) (2)
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Heat map statistics
- Min 0.05 | Avg 0.09 | Max 0.17
Coloring options: