IL_1JJ2_065

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1JJ2|1|0|A|1857, 1JJ2|1|0|C|1872, 1JJ2|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.018

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1JJ2|1|0|C|1854
1JJ2|1|0|G|1855
1JJ2|1|0|C|1856
1JJ2|1|0|A|1857
1JJ2|1|0|A|1858
1JJ2|1|0|A|1859
1JJ2|1|0|U|1860
*
1JJ2|1|0|A|1869
1JJ2|1|0|C|1870
1JJ2|1|0|U|1871
1JJ2|1|0|C|1872
1JJ2|1|0|G|1873
1JJ2|1|0|U|1874
1JJ2|1|0|A|1875
1JJ2|1|0|C|1876
1JJ2|1|0|G|1877

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Y

RIBOSOMAL PROTEIN L37Ae