IL_1JJ2_078
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CAG*CGAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_078 not in the Motif Atlas
- Homologous match to IL_4V9F_080
- Geometric discrepancy: 0.0349
- The information below is about IL_4V9F_080
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 10
Unit IDs
1JJ2|1|0|C|2331
1JJ2|1|0|A|2332
1JJ2|1|0|G|2333
*
1JJ2|1|0|C|2351
1JJ2|1|0|G|2352
1JJ2|1|0|A|2353
1JJ2|1|0|A|2354
1JJ2|1|0|G|2355
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain D
- RIBOSOMAL PROTEIN L5
- Chain M
- RIBOSOMAL PROTEIN L18
- Chain P
- RIBOSOMAL PROTEIN L21E
Coloring options: