IL_1JJ2_090

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_090 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.034

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1JJ2|1|0|A|2689
1JJ2|1|0|U|2690
1JJ2|1|0|A|2691
1JJ2|1|0|G|2692
1JJ2|1|0|U|2693
1JJ2|1|0|A|2694
1JJ2|1|0|C|2695
*
1JJ2|1|0|G|2700
1JJ2|1|0|G|2701
1JJ2|1|0|A|2702
1JJ2|1|0|A|2703
1JJ2|1|0|C|2704
1JJ2|1|0|U|2705

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain E

RIBOSOMAL PROTEIN L6

Chain J

RIBOSOMAL PROTEIN L14