IL_1JJ2_098

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_098 not in the Motif Atlas

Homologous match to IL_4V9F_100

Geometric discrepancy: 0.0376

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

1JJ2|1|0|C|2873
1JJ2|1|0|G|2874
1JJ2|1|0|A|2875
1JJ2|1|0|G|2876
*
1JJ2|1|0|C|2881
1JJ2|1|0|G|2882
1JJ2|1|0|A|2883
1JJ2|1|0|G|2884

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L19E