IL_1JU1_013

3D structure

PDB id

1JU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimer Initiation Sequence of HIV-1Lai Genomic RNA: NMR Solution Structure of the Extended Duplex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JU1_013 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.198

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1JU1|7|A|C|5
1JU1|7|A|U|6
1JU1|7|A|G|7
*
1JU1|7|B|C|40
1JU1|7|B|G|41
1JU1|7|B|G|42

Current chains

Chain A

HIV-1Lai SL1

Chain B

HIV-1Lai SL1

Nearby chains